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The Taub Faculty of Computer Science Events and Talks

Inverse Problems and Unsupervised Learning with applications to Cryo-Electron Microscopy (cryo-EM)
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Roy Lederman - CS-Lecture
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Sunday, 26.11.2017, 10:30
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Room 401 Taub Bld.
Cryo-EM is an imaging technology that is revolutionizing structural biology; the Nobel Prize in Chemistry 2017 was recently awarded to Jacques Dubochet, Joachim Frank and Richard Henderson "for developing cryo-electron microscopy for the high-resolution structure determination of biomolecules in solution". Cryo-electron microscopes produce a large number of very noisy two-dimensional projection images of individual frozen molecules. Unlike related methods, such as computed tomography (CT), the viewing direction of each image is unknown. The unknown directions, together with extreme levels of noise and additional technical factors, make the determination of the structure of molecules challenging. While other methods for structure determination, such as x-ray crystallography and nuclear magnetic resonance (NMR), measure ensembles of molecules together, cryo-EM produces measurements of individual molecules. Therefore, cryo-EM could potentially be used to study mixtures of different conformations of molecules. Indeed, current algorithms have been very successful at analyzing homogeneous samples, and can recover some distinct conformations mixed in solutions, but, the determination of multiple conformations, and in particular, continuums of similar conformations (continuous heterogeneity), remains one of the open problems in cryo-EM. I will discuss a one-dimensional discrete model problem, Heterogeneous Multireference Alignment, which captures many of the properties of the cryo-EM problem, and I will briefly discuss convex optimization approaches and non-convex optimization approaches for this problem. I will then discuss components which we are introducing in order to address the problem of continuous heterogeneity in cryo-EM: 1. "hyper-molecules," the first mathematical formulation of truly continuously heterogeneous molecules, 2. The optimal representation of objects that are highly concentrated in both the spatial domain and the frequency domain using high-dimensional Prolate spheroidal functions, and 3. Bayesian algorithms for inverse problems with an unsupervised-learning component for recovering such hyper-molecules in cryo-EM. Short Bio: Roy Lederman is a postdoc at the Program in Applied and Computational Mathematics at Princeton University, working with Amit Singer. Before joining Princeton, he was a postdoc at Yale University, where he also completed his PhD in applied mathematics, working with Vladimir Rokhlin and Ronald Coifman. Roy holds a BSc in Electrical Engineering and a BSc in Physics from Tel Aviv University.