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Benchmarking Ophthalmology Foundation Models for Clinically Significant AMD Detection
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Benjamin A. Cohen (M.Sc. Thesis Seminar)
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Thursday, 24.04.2025, 12:30
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Bio-Medical Engineering Room 201 & Zoom 
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Advisor: Assoc. Prof. Joachim Behar & Dr. Eran Berkowitz

Self-supervised learning (SSL) has enabled Vision Transformers (ViTs) to learn robust representations from large-scale natural image datasets, enhancing their generalization across domains. In retinal imaging, foundation models pretrained on either natural or ophthalmic data have shown promise, but the benefits of in-domain pretraining remain uncertain. To investigate this, we benchmark six SSL-pretrained ViTs on seven digital fundus image (DFI) datasets totaling 70,000 expert-annotated images for the task of moderate-to-late age-related macular degeneration (AMD) identification. Our results show that iBOT pretrained on natural images, achieves the highest out-of-distribution generalization, with AUROCs of 0.80–0.97, outperforming domain-specific models, which achieved AUROCs of 0.78–0.96 and a baseline ViT-L with no pretraining, which achieved AUROC of 0.68-0.91. These findings highlight the value of foundation models in improving AMD identification, and challenge the assumption that in-domain pretraining is necessary. Furthermore, we release BRAMD, an open-access dataset (n=587) of DFIs with AMD labels from Brazil.